Variant report

Variant	rs62276848
Chromosome Location	chr3:111937708-111937709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10511304	1.00[ASN][1000 genomes]
rs10804498	1.00[ASN][1000 genomes]
rs10934163	1.00[ASN][1000 genomes]
rs10934164	1.00[ASN][1000 genomes]
rs10934165	1.00[ASN][1000 genomes]
rs11709101	1.00[ASN][1000 genomes]
rs11717777	1.00[ASN][1000 genomes]
rs11720514	1.00[ASN][1000 genomes]
rs11923402	1.00[ASN][1000 genomes]
rs11926389	0.81[AMR][1000 genomes]
rs12497979	1.00[ASN][1000 genomes]
rs13064242	0.80[AMR][1000 genomes]
rs13084103	1.00[ASN][1000 genomes]
rs1317295	1.00[ASN][1000 genomes]
rs1317658	1.00[ASN][1000 genomes]
rs13316383	1.00[ASN][1000 genomes]
rs1388858	0.81[AMR][1000 genomes]
rs1388859	0.81[AMR][1000 genomes]
rs1492479	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17505536	0.82[AMR][1000 genomes]
rs17513880	1.00[ASN][1000 genomes]
rs1873712	0.82[AMR][1000 genomes]
rs1907764	0.81[AMR][1000 genomes]
rs2399419	1.00[ASN][1000 genomes]
rs28615303	1.00[ASN][1000 genomes]
rs2895391	0.81[AMR][1000 genomes]
rs4234411	0.81[AMR][1000 genomes]
rs4321508	0.81[AMR][1000 genomes]
rs4347976	0.81[AMR][1000 genomes]
rs4401339	0.81[AMR][1000 genomes]
rs4498008	0.81[AMR][1000 genomes]
rs4507228	0.81[AMR][1000 genomes]
rs4507229	1.00[ASN][1000 genomes]
rs4538347	0.81[AMR][1000 genomes]
rs4622877	1.00[ASN][1000 genomes]
rs4638935	0.81[AMR][1000 genomes]
rs4682373	0.81[AMR][1000 genomes]
rs4682393	1.00[ASN][1000 genomes]
rs4682400	1.00[ASN][1000 genomes]
rs55714509	0.86[AMR][1000 genomes]
rs55748364	1.00[ASN][1000 genomes]
rs55947719	1.00[ASN][1000 genomes]
rs56008438	1.00[ASN][1000 genomes]
rs56042414	0.86[AMR][1000 genomes]
rs56065326	1.00[ASN][1000 genomes]
rs56364691	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56404254	1.00[ASN][1000 genomes]
rs57998879	1.00[ASN][1000 genomes]
rs60949597	1.00[ASN][1000 genomes]
rs62262366	1.00[ASN][1000 genomes]
rs62262408	1.00[ASN][1000 genomes]
rs62262411	1.00[ASN][1000 genomes]
rs62264125	1.00[ASN][1000 genomes]
rs62264128	1.00[ASN][1000 genomes]
rs62276971	0.82[AMR][1000 genomes]
rs62276973	0.82[AMR][1000 genomes]
rs62277480	0.86[AMR][1000 genomes]
rs62278760	1.00[ASN][1000 genomes]
rs62278765	1.00[ASN][1000 genomes]
rs62278768	1.00[ASN][1000 genomes]
rs62278769	1.00[ASN][1000 genomes]
rs62278770	1.00[ASN][1000 genomes]
rs62278771	1.00[ASN][1000 genomes]
rs62278843	1.00[ASN][1000 genomes]
rs6438072	1.00[ASN][1000 genomes]
rs6770357	0.80[AMR][1000 genomes]
rs6775536	1.00[ASN][1000 genomes]
rs6781207	0.80[AMR][1000 genomes]
rs6781215	0.80[AMR][1000 genomes]
rs6789875	0.81[AMR][1000 genomes]
rs6795820	1.00[ASN][1000 genomes]
rs6804836	0.81[AMR][1000 genomes]
rs6805505	0.80[AMR][1000 genomes]
rs6805887	0.80[AMR][1000 genomes]
rs73216052	1.00[ASN][1000 genomes]
rs73223638	1.00[ASN][1000 genomes]
rs732686	1.00[ASN][1000 genomes]
rs7431999	0.81[AMR][1000 genomes]
rs7432037	0.81[AMR][1000 genomes]
rs7609904	1.00[ASN][1000 genomes]
rs7612748	1.00[ASN][1000 genomes]
rs7621431	1.00[ASN][1000 genomes]
rs7631223	0.81[AMR][1000 genomes]
rs7631673	1.00[ASN][1000 genomes]
rs7636107	1.00[ASN][1000 genomes]
rs7650962	1.00[ASN][1000 genomes]
rs7651121	1.00[ASN][1000 genomes]
rs9288942	0.81[AMR][1000 genomes]
rs9810421	1.00[ASN][1000 genomes]
rs9811691	1.00[ASN][1000 genomes]
rs9813882	0.81[AMR][1000 genomes]
rs9816969	1.00[ASN][1000 genomes]
rs9818407	1.00[ASN][1000 genomes]
rs9829698	1.00[ASN][1000 genomes]
rs9838986	0.81[AMR][1000 genomes]
rs9851760	1.00[ASN][1000 genomes]
rs9853669	1.00[ASN][1000 genomes]
rs9855755	1.00[ASN][1000 genomes]
rs9862316	1.00[ASN][1000 genomes]
rs9871492	0.80[AMR][1000 genomes]
rs9871532	0.81[AMR][1000 genomes]
rs9877734	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3437811	chr3:111929311-111950399	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111937000-111942800	Weak transcription	Left Ventricle	heart

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