Variant report

Variant	rs2411549
Chromosome Location	chr4:190870920-190870921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10001956	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11132770	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11132771	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11736387	0.84[EUR][1000 genomes]
rs11736960	0.81[EUR][1000 genomes]
rs12646565	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12646667	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12646672	0.85[EUR][1000 genomes]
rs12649488	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12649515	0.85[EUR][1000 genomes]
rs13121836	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13121986	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13133725	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13133958	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13146111	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13148101	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1961818	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2037947	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2037948	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2078634	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2411530	0.81[EUR][1000 genomes]
rs3775989	0.82[EUR][1000 genomes]
rs4145515	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4145516	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4145517	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6553396	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6816856	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6820684	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6837422	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7657916	0.94[EUR][1000 genomes]
rs7658339	0.93[EUR][1000 genomes]
rs7668489	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7675870	0.84[EUR][1000 genomes]
rs7691161	0.88[EUR][1000 genomes]
rs9992042	0.88[EUR][1000 genomes]
rs9996679	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2411549	AF146191.4	cis	Thyroid	GTEx
rs2411549	AF146191.4	cis	Esophagus Muscularis	GTEx

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:190862600-190881000	Weak transcription	Spleen	Spleen
2	chr4:190863000-190880800	Weak transcription	Brain Angular Gyrus	brain
3	chr4:190863200-190873800	Weak transcription	Placenta	Placenta
4	chr4:190863200-190874600	Weak transcription	Fetal Intestine Large	intestine
5	chr4:190863200-190875600	Weak transcription	Fetal Thymus	thymus
6	chr4:190863200-190876000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:190863200-190876400	Weak transcription	Osteobl	bone
8	chr4:190863200-190879400	Weak transcription	Gastric	stomach
9	chr4:190863200-190880400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:190863200-190880400	Weak transcription	Fetal Intestine Small	intestine
11	chr4:190863200-190880800	Weak transcription	HSMMtube	muscle
12	chr4:190863200-190882000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:190863400-190875200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:190863600-190877200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:190863600-190877200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:190863600-190878800	Weak transcription	Brain Germinal Matrix	brain
17	chr4:190863600-190882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:190863800-190876000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr4:190863800-190880200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:190863800-190881000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:190864000-190875400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:190864000-190878400	Weak transcription	A549	lung
23	chr4:190864200-190877200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr4:190864200-190879400	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:190866800-190872800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:190866800-190873800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:190866800-190874600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr4:190866800-190875800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:190866800-190877200	Weak transcription	Aorta	Aorta
30	chr4:190866800-190877200	Weak transcription	Psoas Muscle	Psoas
31	chr4:190866800-190877200	Weak transcription	NH-A	brain
32	chr4:190866800-190877200	Weak transcription	NHLF	lung
33	chr4:190866800-190879400	Weak transcription	Fetal Heart	heart
34	chr4:190866800-190881000	Weak transcription	Stomach Mucosa	stomach
35	chr4:190867000-190871000	Weak transcription	Small Intestine	intestine
36	chr4:190867000-190871200	Weak transcription	Fetal Lung	lung
37	chr4:190867000-190873800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:190867000-190874400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:190867000-190874600	Weak transcription	HSMM	muscle
40	chr4:190867000-190875800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr4:190867000-190875800	Weak transcription	Primary B cells from cord blood	blood
42	chr4:190867000-190875800	Weak transcription	Brain Anterior Caudate	brain
43	chr4:190867000-190876000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr4:190867000-190876200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr4:190867000-190877200	Weak transcription	Fetal Brain Male	brain
46	chr4:190867000-190878800	Weak transcription	GM12878-XiMat	blood
47	chr4:190867600-190871000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr4:190867600-190873800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr4:190867800-190871000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr4:190867800-190871200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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