Variant report

Variant	rs7675870
Chromosome Location	chr4:190880291-190880292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RXRA	chr4:190879624-190880365	HepG2	liver:	n/a	n/a
2	POU2F2	chr4:190879542-190880312	GM12878	blood:	n/a	n/a
3	SP1	chr4:190880272-190880719	HepG2	liver:	n/a	n/a
4	PAX5	chr4:190880265-190880820	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
FRG1	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10001956	0.87[EUR][1000 genomes]
rs11132770	0.85[EUR][1000 genomes]
rs11132771	0.86[EUR][1000 genomes]
rs11132783	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11736387	0.80[EUR][1000 genomes]
rs11736960	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12641802	0.91[CEU][hapmap]
rs12646565	0.90[EUR][1000 genomes]
rs12646667	0.90[EUR][1000 genomes]
rs12646672	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12649488	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12649515	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13121836	0.90[EUR][1000 genomes]
rs13121986	0.90[EUR][1000 genomes]
rs13131647	0.80[EUR][1000 genomes]
rs13133725	0.89[EUR][1000 genomes]
rs13133958	0.90[EUR][1000 genomes]
rs13146111	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13148101	0.89[EUR][1000 genomes]
rs2037947	0.90[EUR][1000 genomes]
rs2037948	0.86[EUR][1000 genomes]
rs2078634	0.80[EUR][1000 genomes]
rs2293865	0.84[EUR][1000 genomes]
rs2411549	0.84[EUR][1000 genomes]
rs3775989	0.85[EUR][1000 genomes]
rs4145515	0.86[EUR][1000 genomes]
rs4145517	0.86[EUR][1000 genomes]
rs6553396	0.89[EUR][1000 genomes]
rs6816856	0.89[EUR][1000 genomes]
rs6837422	0.87[EUR][1000 genomes]
rs7657916	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7658339	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7668489	0.89[EUR][1000 genomes]
rs7691161	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9990612	0.80[EUR][1000 genomes]
rs9992042	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9996679	0.87[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7675870	AF146191.4	cis	Esophagus Muscularis	GTEx
rs7675870	AF146191.4	cis	Thyroid	GTEx

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:190862600-190881000	Weak transcription	Spleen	Spleen
2	chr4:190863000-190880800	Weak transcription	Brain Angular Gyrus	brain
3	chr4:190863200-190880400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:190863200-190880400	Weak transcription	Fetal Intestine Small	intestine
5	chr4:190863200-190880800	Weak transcription	HSMMtube	muscle
6	chr4:190863200-190882000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:190863600-190882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:190863800-190881000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:190866800-190881000	Weak transcription	Stomach Mucosa	stomach
10	chr4:190870400-190880600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:190870400-190881000	Weak transcription	Lung	lung
12	chr4:190871400-190884400	Weak transcription	Brain Substantia Nigra	brain
13	chr4:190872800-190880600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:190873800-190880600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:190873800-190880600	Strong transcription	Placenta	Placenta
16	chr4:190874400-190880400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr4:190874400-190881000	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:190874600-190882200	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr4:190874600-190885400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
20	chr4:190875200-190881000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:190875400-190881000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:190875800-190880400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:190875800-190881000	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr4:190875800-190882200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:190875800-190884400	Strong transcription	Adipose Nuclei	Adipose
26	chr4:190876000-190884200	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:190876000-190885400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr4:190876200-190882800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr4:190876400-190881000	Weak transcription	Right Ventricle	heart
30	chr4:190876800-190881000	Weak transcription	Colon Smooth Muscle	Colon
31	chr4:190877400-190880800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr4:190877400-190880800	Weak transcription	Colonic Mucosa	Colon
33	chr4:190877400-190881000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr4:190877400-190881000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:190877400-190881000	Weak transcription	Psoas Muscle	Psoas
36	chr4:190877400-190882000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:190877600-190880800	Weak transcription	Brain Hippocampus Middle	brain
38	chr4:190877600-190881000	Weak transcription	Fetal Thymus	thymus
39	chr4:190877800-190882200	Weak transcription	Osteobl	bone
40	chr4:190878400-190881000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr4:190878400-190882600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:190878400-190884800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:190878400-190885200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
44	chr4:190878600-190880800	Strong transcription	Liver	Liver
45	chr4:190878800-190882800	ZNF genes & repeats	Brain Germinal Matrix	brain
46	chr4:190878800-190885200	ZNF genes & repeats	Primary B cells from cord blood	blood
47	chr4:190879000-190882600	Strong transcription	Fetal Intestine Large	intestine
48	chr4:190879000-190882800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:190879000-190882800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:190879000-190884600	Strong transcription	Primary T cells fromperipheralblood	blood

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