Variant report

Variant	rs13131647
Chromosome Location	chr4:190884855-190884856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10006319	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10026449	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11132782	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11132783	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11736960	0.83[AMR][1000 genomes]
rs12646565	0.82[EUR][1000 genomes]
rs12646667	0.81[EUR][1000 genomes]
rs12649488	0.83[EUR][1000 genomes]
rs13114544	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13121836	0.81[EUR][1000 genomes]
rs13121986	0.81[EUR][1000 genomes]
rs13133725	0.81[EUR][1000 genomes]
rs13133958	0.82[EUR][1000 genomes]
rs13146111	0.81[AMR][1000 genomes]
rs13148101	0.80[EUR][1000 genomes]
rs2037947	0.81[EUR][1000 genomes]
rs60965499	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6553396	0.81[EUR][1000 genomes]
rs6816856	0.81[EUR][1000 genomes]
rs6850600	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7657916	0.81[EUR][1000 genomes]
rs7658339	0.80[EUR][1000 genomes]
rs7668489	0.81[EUR][1000 genomes]
rs7675870	0.80[EUR][1000 genomes]
rs9917991	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9917993	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9990612	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13131647	AF146191.4	cis	Esophagus Muscularis	GTEx
rs13131647	AF146191.4	cis	Thyroid	GTEx

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:190874600-190885400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr4:190876000-190885400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr4:190878400-190885200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
4	chr4:190878800-190885200	ZNF genes & repeats	Primary B cells from cord blood	blood
5	chr4:190879000-190885400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr4:190879000-190886000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr4:190879200-190885200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr4:190879200-190885200	ZNF genes & repeats	Dnd41	blood
9	chr4:190879200-190886000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:190879400-190885200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr4:190880400-190885200	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr4:190880400-190886000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr4:190880400-190886000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:190880800-190885800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:190880800-190886000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:190880800-190886000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
17	chr4:190880800-190886000	ZNF genes & repeats	Fetal Lung	lung
18	chr4:190882000-190885800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:190882200-190885200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr4:190882200-190885200	ZNF genes & repeats	Fetal Brain Male	brain
21	chr4:190882200-190885800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
22	chr4:190882600-190885200	ZNF genes & repeats	Fetal Intestine Large	intestine
23	chr4:190882600-190886200	Weak transcription	Osteobl	bone
24	chr4:190882600-190891600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr4:190883000-190885000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
26	chr4:190883200-190885200	ZNF genes & repeats	Colonic Mucosa	Colon
27	chr4:190883200-190886000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:190883400-190885000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
29	chr4:190883400-190886000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr4:190883400-190886000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:190883400-190886000	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr4:190883600-190885000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr4:190883600-190885000	ZNF genes & repeats	GM12878-XiMat	blood
34	chr4:190883600-190885200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:190883600-190885200	ZNF genes & repeats	Fetal Kidney	kidney
36	chr4:190883600-190885200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
37	chr4:190883600-190885800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
38	chr4:190883600-190886000	ZNF genes & repeats	Fetal Brain Female	brain
39	chr4:190883800-190885000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
40	chr4:190883800-190885000	ZNF genes & repeats	HSMM	muscle
41	chr4:190883800-190885200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
42	chr4:190883800-190885200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
43	chr4:190883800-190885200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
44	chr4:190883800-190885400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
45	chr4:190883800-190885400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:190883800-190886000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
47	chr4:190884200-190885000	Strong transcription	A549	lung
48	chr4:190884200-190885800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr4:190884200-190885800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr4:190884200-190885800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle

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