Variant report

Variant	rs10006319
Chromosome Location	chr4:190885652-190885653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10026449	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11132782	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11132783	0.90[EUR][1000 genomes]
rs13114544	0.88[EUR][1000 genomes]
rs13131647	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60965499	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9917991	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9917993	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9990612	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10006319	AF146191.4	cis	Esophagus Muscularis	GTEx
rs10006319	AF146191.4	cis	Thyroid	GTEx

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:190879000-190886000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
2	chr4:190879200-190886000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:190880400-190886000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr4:190880400-190886000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:190880800-190885800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:190880800-190886000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:190880800-190886000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
8	chr4:190880800-190886000	ZNF genes & repeats	Fetal Lung	lung
9	chr4:190882000-190885800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:190882200-190885800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr4:190882600-190886200	Weak transcription	Osteobl	bone
12	chr4:190882600-190891600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:190883200-190886000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:190883400-190886000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr4:190883400-190886000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:190883400-190886000	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr4:190883600-190885800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
18	chr4:190883600-190886000	ZNF genes & repeats	Fetal Brain Female	brain
19	chr4:190883800-190886000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr4:190884200-190885800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:190884200-190885800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr4:190884200-190885800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
23	chr4:190884200-190886000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:190884400-190885800	ZNF genes & repeats	Aorta	Aorta
25	chr4:190884400-190886000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:190884400-190886000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:190884400-190886000	ZNF genes & repeats	Liver	Liver
28	chr4:190884400-190886000	ZNF genes & repeats	Brain Germinal Matrix	brain
29	chr4:190884400-190886000	ZNF genes & repeats	Lung	lung
30	chr4:190884600-190885800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:190884600-190885800	ZNF genes & repeats	Pancreas	Pancrea
32	chr4:190884600-190885800	ZNF genes & repeats	Spleen	Spleen
33	chr4:190884600-190886000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:190884600-190886000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr4:190884600-190886000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:190884600-190886000	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr4:190884600-190886000	ZNF genes & repeats	Placenta	Placenta
38	chr4:190884600-190886000	ZNF genes & repeats	Left Ventricle	heart
39	chr4:190884600-190886000	ZNF genes & repeats	Thymus	Thymus
40	chr4:190884600-190891200	Weak transcription	HUVEC	blood vessel
41	chr4:190884600-190891200	Weak transcription	K562	blood
42	chr4:190884800-190885800	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr4:190884800-190886000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:190884800-190886000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:190884800-190886000	ZNF genes & repeats	Fetal Stomach	stomach
46	chr4:190884800-190886400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr4:190884800-190886600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr4:190884800-190888800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr4:190884800-190891600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:190884800-190891600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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