Variant report

Variant	rs60965499
Chromosome Location	chr4:190889688-190889689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10006319	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10026449	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11132782	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11132783	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11736960	0.83[AMR][1000 genomes]
rs12645480	0.81[AMR][1000 genomes]
rs12645549	0.81[EUR][1000 genomes]
rs12646565	0.81[EUR][1000 genomes]
rs12646667	0.81[EUR][1000 genomes]
rs12649488	0.82[EUR][1000 genomes]
rs13114544	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13121836	0.81[EUR][1000 genomes]
rs13121986	0.81[EUR][1000 genomes]
rs13131647	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13133725	0.80[EUR][1000 genomes]
rs13133958	0.81[EUR][1000 genomes]
rs13146111	0.82[AMR][1000 genomes]
rs2037947	0.81[EUR][1000 genomes]
rs6553396	0.80[EUR][1000 genomes]
rs6816856	0.80[EUR][1000 genomes]
rs6850600	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7657916	0.81[EUR][1000 genomes]
rs7668489	0.80[EUR][1000 genomes]
rs9917991	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9917993	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9990612	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:190882600-190891600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:190884600-190891200	Weak transcription	HUVEC	blood vessel
3	chr4:190884600-190891200	Weak transcription	K562	blood
4	chr4:190884800-190891600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:190884800-190891600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:190885000-190890200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:190885000-190891200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:190885000-190891200	Weak transcription	GM12878-XiMat	blood
9	chr4:190885000-190891600	Weak transcription	A549	lung
10	chr4:190885000-190893800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:190885200-190889800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:190885200-190890400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:190885200-190891200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:190885200-190891200	Weak transcription	Primary T cells from cord blood	blood
15	chr4:190885200-190891200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:190885200-190891200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:190885200-190891400	Weak transcription	Dnd41	blood
18	chr4:190885200-190891600	Weak transcription	Brain Anterior Caudate	brain
19	chr4:190885200-190891800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:190885200-190893600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr4:190885400-190891200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:190885400-190891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr4:190885400-190891200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:190885400-190891600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:190885600-190891600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:190885600-190891600	Weak transcription	Gastric	stomach
27	chr4:190885800-190891000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:190885800-190891200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr4:190885800-190891200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr4:190885800-190891400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:190885800-190891600	Weak transcription	Pancreas	Pancrea
32	chr4:190885800-190891600	Weak transcription	Spleen	Spleen
33	chr4:190886000-190890600	Weak transcription	Liver	Liver
34	chr4:190886000-190891200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:190886000-190891200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:190886000-190891200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:190886000-190891200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:190886000-190891200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:190886000-190891400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:190886000-190891400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:190886000-190891400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:190886000-190891400	Weak transcription	Fetal Lung	lung
43	chr4:190886000-190891800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:190886000-190891800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:190886000-190893600	Weak transcription	Ovary	ovary

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