Variant report

Variant	rs11132782
Chromosome Location	chr4:190886229-190886230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10006319	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10026449	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11132783	0.95[EUR][1000 genomes]
rs12645549	0.81[EUR][1000 genomes]
rs12646565	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12649488	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13114544	0.92[EUR][1000 genomes]
rs13131647	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13133958	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2037947	0.80[ASN][1000 genomes]
rs60965499	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6850600	0.83[EUR][1000 genomes]
rs9917991	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9917993	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9990612	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11132782	AF146191.4	cis	Thyroid	GTEx
rs11132782	AF146191.4	cis	Esophagus Muscularis	GTEx

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:190882600-190891600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:190884600-190891200	Weak transcription	HUVEC	blood vessel
3	chr4:190884600-190891200	Weak transcription	K562	blood
4	chr4:190884800-190886400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr4:190884800-190886600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:190884800-190888800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:190884800-190891600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:190884800-190891600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:190885000-190887800	Weak transcription	HSMM	muscle
10	chr4:190885000-190889200	Weak transcription	Right Ventricle	heart
11	chr4:190885000-190890200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:190885000-190891200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:190885000-190891200	Weak transcription	GM12878-XiMat	blood
14	chr4:190885000-190891600	Weak transcription	A549	lung
15	chr4:190885000-190893800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr4:190885200-190887000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr4:190885200-190887600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:190885200-190889800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:190885200-190890400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:190885200-190891200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:190885200-190891200	Weak transcription	Primary T cells from cord blood	blood
22	chr4:190885200-190891200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:190885200-190891200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr4:190885200-190891400	Weak transcription	Dnd41	blood
25	chr4:190885200-190891600	Weak transcription	Brain Anterior Caudate	brain
26	chr4:190885200-190891800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:190885200-190893600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr4:190885400-190888600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:190885400-190891200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:190885400-190891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr4:190885400-190891200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr4:190885400-190891600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:190885600-190891600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr4:190885600-190891600	Weak transcription	Gastric	stomach
35	chr4:190885800-190887800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:190885800-190888000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr4:190885800-190888400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:190885800-190891000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr4:190885800-190891200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr4:190885800-190891200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr4:190885800-190891400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr4:190885800-190891600	Weak transcription	Pancreas	Pancrea
43	chr4:190885800-190891600	Weak transcription	Spleen	Spleen
44	chr4:190886000-190886400	Weak transcription	Lung	lung
45	chr4:190886000-190886600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr4:190886000-190886800	Weak transcription	Fetal Intestine Small	intestine
47	chr4:190886000-190886800	Weak transcription	Placenta	Placenta
48	chr4:190886000-190888200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:190886000-190888400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr4:190886000-190890600	Weak transcription	Liver	Liver

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