Variant report

Variant	rs13114544
Chromosome Location	chr4:190892520-190892521
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:29634674..29636233-chr4:190890902..190893775,2	K562	blood:
2	chr20:29634371..29640092-chr4:190891314..190895900,7	MCF-7	breast:
3	chr20:29634644..29639248-chr4:190892116..190896171,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238151	Chromatin interaction
ENSG00000221319	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10006319	0.88[EUR][1000 genomes]
rs10026449	0.84[EUR][1000 genomes]
rs11132782	0.92[EUR][1000 genomes]
rs11132783	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12645549	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13131647	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60965499	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6850600	0.81[EUR][1000 genomes]
rs9917991	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9917993	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9990612	0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13114544	AF146191.4	cis	Thyroid	GTEx

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:190885000-190893800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr4:190885200-190893600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:190886000-190893600	Weak transcription	Ovary	ovary
4	chr4:190891200-190892600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:190891200-190892600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:190891200-190896400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr4:190891400-190896400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:190891400-190897000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr4:190892000-190893600	Weak transcription	Spleen	Spleen
10	chr4:190892000-190893800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:190892200-190893600	Weak transcription	Gastric	stomach
12	chr4:190892200-190893600	Weak transcription	Pancreas	Pancrea
13	chr4:190892400-190893400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:190892400-190893600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:190892400-190893600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:190892400-190893600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:190892400-190893600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:190892400-190893600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr4:190892400-190893600	Weak transcription	Liver	Liver
20	chr4:190892400-190893600	Weak transcription	Brain Anterior Caudate	brain
21	chr4:190892400-190893600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr4:190892400-190893600	Weak transcription	Fetal Brain Male	brain
23	chr4:190892400-190893600	Weak transcription	GM12878-XiMat	blood
24	chr4:190892400-190893600	Weak transcription	HUVEC	blood vessel
25	chr4:190892400-190893800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:190892400-190893800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:190892400-190893800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:190892400-190893800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:190892400-190893800	Weak transcription	K562	blood
30	chr4:190892400-190894400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:190892400-190894600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:190892400-190895800	Weak transcription	Adipose Nuclei	Adipose
33	chr4:190892400-190895800	Weak transcription	Rectal Smooth Muscle	rectum

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