Variant report

Variant	rs10026449
Chromosome Location	chr4:190885285-190885286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10006319	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11132782	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11132783	0.88[EUR][1000 genomes]
rs13114544	0.84[EUR][1000 genomes]
rs13131647	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60965499	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6850600	0.81[EUR][1000 genomes]
rs9917991	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9917993	0.83[EUR][1000 genomes]
rs9990612	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10026449	AF146191.4	cis	Thyroid	GTEx
rs10026449	AF146191.4	cis	Esophagus Muscularis	GTEx

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:190874600-190885400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr4:190876000-190885400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr4:190879000-190885400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr4:190879000-190886000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr4:190879200-190886000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:190880400-190886000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr4:190880400-190886000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:190880800-190885800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:190880800-190886000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:190880800-190886000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
11	chr4:190880800-190886000	ZNF genes & repeats	Fetal Lung	lung
12	chr4:190882000-190885800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:190882200-190885800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr4:190882600-190886200	Weak transcription	Osteobl	bone
15	chr4:190882600-190891600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:190883200-190886000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:190883400-190886000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr4:190883400-190886000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:190883400-190886000	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr4:190883600-190885800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
21	chr4:190883600-190886000	ZNF genes & repeats	Fetal Brain Female	brain
22	chr4:190883800-190885400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
23	chr4:190883800-190885400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:190883800-190886000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr4:190884200-190885800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:190884200-190885800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr4:190884200-190885800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
28	chr4:190884200-190886000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:190884400-190885400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
30	chr4:190884400-190885400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:190884400-190885400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:190884400-190885400	ZNF genes & repeats	Adipose Nuclei	Adipose
33	chr4:190884400-190885400	ZNF genes & repeats	Ovary	ovary
34	chr4:190884400-190885800	ZNF genes & repeats	Aorta	Aorta
35	chr4:190884400-190886000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:190884400-190886000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:190884400-190886000	ZNF genes & repeats	Liver	Liver
38	chr4:190884400-190886000	ZNF genes & repeats	Brain Germinal Matrix	brain
39	chr4:190884400-190886000	ZNF genes & repeats	Lung	lung
40	chr4:190884600-190885400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr4:190884600-190885600	ZNF genes & repeats	Gastric	stomach
42	chr4:190884600-190885800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:190884600-190885800	ZNF genes & repeats	Pancreas	Pancrea
44	chr4:190884600-190885800	ZNF genes & repeats	Spleen	Spleen
45	chr4:190884600-190886000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:190884600-190886000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
47	chr4:190884600-190886000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:190884600-190886000	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr4:190884600-190886000	ZNF genes & repeats	Placenta	Placenta
50	chr4:190884600-190886000	ZNF genes & repeats	Left Ventricle	heart

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