Variant report

Variant	rs7668489
Chromosome Location	chr4:190869704-190869705
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10001956	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11132770	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11132771	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1138718	0.80[EUR][1000 genomes]
rs11736387	0.90[EUR][1000 genomes]
rs11736960	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12646565	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12646667	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12646672	0.91[EUR][1000 genomes]
rs12649488	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12649515	0.91[EUR][1000 genomes]
rs13121836	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13121986	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13131647	0.81[EUR][1000 genomes]
rs13133725	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13133958	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13146111	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13148101	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1961818	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2037947	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2037948	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2078634	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2411530	0.82[EUR][1000 genomes]
rs2411549	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3775989	0.87[EUR][1000 genomes]
rs4145515	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4145516	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4145517	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60965499	0.80[EUR][1000 genomes]
rs6553396	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6816856	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6820684	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6837422	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7657916	0.98[EUR][1000 genomes]
rs7658339	0.97[EUR][1000 genomes]
rs7675870	0.89[EUR][1000 genomes]
rs7691161	0.93[EUR][1000 genomes]
rs9990612	0.81[EUR][1000 genomes]
rs9992042	0.94[EUR][1000 genomes]
rs9996679	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7668489	AF146191.4	cis	Thyroid	GTEx
rs7668489	AF146191.4	cis	Esophagus Muscularis	GTEx

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:190862600-190869800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:190862600-190881000	Weak transcription	Spleen	Spleen
3	chr4:190863000-190880800	Weak transcription	Brain Angular Gyrus	brain
4	chr4:190863200-190869800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:190863200-190869800	Weak transcription	Left Ventricle	heart
6	chr4:190863200-190873800	Weak transcription	Placenta	Placenta
7	chr4:190863200-190874600	Weak transcription	Fetal Intestine Large	intestine
8	chr4:190863200-190875600	Weak transcription	Fetal Thymus	thymus
9	chr4:190863200-190876000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:190863200-190876400	Weak transcription	Osteobl	bone
11	chr4:190863200-190879400	Weak transcription	Gastric	stomach
12	chr4:190863200-190880400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:190863200-190880400	Weak transcription	Fetal Intestine Small	intestine
14	chr4:190863200-190880800	Weak transcription	HSMMtube	muscle
15	chr4:190863200-190882000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:190863400-190875200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:190863600-190877200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr4:190863600-190877200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:190863600-190878800	Weak transcription	Brain Germinal Matrix	brain
20	chr4:190863600-190882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:190863800-190870200	Weak transcription	Colonic Mucosa	Colon
22	chr4:190863800-190876000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:190863800-190880200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:190863800-190881000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:190864000-190875400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:190864000-190878400	Weak transcription	A549	lung
27	chr4:190864200-190877200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:190864200-190879400	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:190866800-190870200	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:190866800-190872800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:190866800-190873800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:190866800-190874600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr4:190866800-190875800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr4:190866800-190877200	Weak transcription	Aorta	Aorta
35	chr4:190866800-190877200	Weak transcription	Psoas Muscle	Psoas
36	chr4:190866800-190877200	Weak transcription	NH-A	brain
37	chr4:190866800-190877200	Weak transcription	NHLF	lung
38	chr4:190866800-190879400	Weak transcription	Fetal Heart	heart
39	chr4:190866800-190881000	Weak transcription	Stomach Mucosa	stomach
40	chr4:190867000-190869800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:190867000-190869800	Weak transcription	Ovary	ovary
42	chr4:190867000-190870000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr4:190867000-190870000	Weak transcription	HUVEC	blood vessel
44	chr4:190867000-190870200	Weak transcription	Fetal Kidney	kidney
45	chr4:190867000-190871000	Weak transcription	Small Intestine	intestine
46	chr4:190867000-190871200	Weak transcription	Fetal Lung	lung
47	chr4:190867000-190873800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:190867000-190874400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:190867000-190874600	Weak transcription	HSMM	muscle
50	chr4:190867000-190875800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links