Variant report

Variant	rs2414224
Chromosome Location	chr15:53304349-53304350
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12594246	0.93[ASN][1000 genomes]
rs12595165	0.90[EUR][1000 genomes]
rs17659077	0.82[ASN][1000 genomes]
rs2047667	0.83[ASN][1000 genomes]
rs2047668	0.83[ASN][1000 genomes]
rs4142454	0.82[ASN][1000 genomes]
rs7174447	0.91[ASN][1000 genomes]
rs73402033	0.82[ASN][1000 genomes]
rs73402040	0.82[ASN][1000 genomes]
rs73402043	0.81[ASN][1000 genomes]
rs73402051	0.80[ASN][1000 genomes]
rs8027120	0.93[ASN][1000 genomes]
rs8027138	0.93[ASN][1000 genomes]
rs8042629	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833007	chr15:53264564-53453525	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1052623	chr15:53265803-53316510	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1042778	chr15:53270983-53316510	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1037269	chr15:53276393-53316510	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv904221	chr15:53279378-53434365	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv569429	chr15:53301023-53329302	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53303200-53304600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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