Variant report

Variant	rs2414554
Chromosome Location	chr15:58532291-58532292
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10851634	0.88[CEU][hapmap]
rs11071369	0.88[CEU][hapmap]
rs11071370	0.87[CEU][hapmap]
rs11632498	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637181	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637278	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854297	0.88[CEU][hapmap]
rs12908890	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1663258	0.95[ASN][1000 genomes]
rs16939955	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16939960	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16939962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711057	0.88[CEU][hapmap]
rs1711063	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1867380	0.88[CEU][hapmap]
rs1992587	0.88[CEU][hapmap]
rs2249783	0.88[CEU][hapmap]
rs28510553	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28578652	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28663995	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34717982	0.88[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3858889	0.88[CEU][hapmap]
rs3858890	0.88[CEU][hapmap]
rs4402495	0.96[ASN][1000 genomes]
rs4775018	0.88[CEU][hapmap]
rs57649249	0.81[ASN][1000 genomes]
rs67026867	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67047612	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67215667	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67690745	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7164935	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7172755	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7174254	0.93[ASN][1000 genomes]
rs7181221	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7496568	0.88[CEU][hapmap]
rs755079	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8025888	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv904264	chr15:58505122-58588510	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv904265	chr15:58517528-58588510	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58521400-58534200	Weak transcription	Liver	Liver
2	chr15:58523200-58537800	Weak transcription	Left Ventricle	heart
3	chr15:58524800-58547400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:58525000-58535200	Weak transcription	Right Atrium	heart
5	chr15:58527200-58533800	Weak transcription	Placenta	Placenta
6	chr15:58527600-58534000	Weak transcription	Hela-S3	cervix
7	chr15:58529600-58535400	Weak transcription	Primary T cells from cord blood	blood
8	chr15:58531600-58533200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr15:58531800-58532400	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr15:58531800-58532800	Enhancers	Psoas Muscle	Psoas
11	chr15:58532000-58533000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:58532200-58532800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:58532200-58533000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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