Variant report

Variant	rs7172755
Chromosome Location	chr15:58524142-58524143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58516526..58518271-chr15:58524056..58526534,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10851634	0.88[CEU][hapmap]
rs11071369	0.88[CEU][hapmap]
rs11071370	0.87[CEU][hapmap]
rs11632498	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11637181	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11637278	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11854297	0.88[CEU][hapmap]
rs12908890	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1663258	0.88[ASN][1000 genomes]
rs16939955	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16939960	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16939962	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1711057	0.88[CEU][hapmap]
rs1711063	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1867380	0.88[CEU][hapmap]
rs1992587	0.88[CEU][hapmap]
rs2249783	0.88[CEU][hapmap]
rs2414554	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28510553	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28578652	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28663995	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34717982	0.88[CEU][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3858889	0.88[CEU][hapmap]
rs3858890	0.88[CEU][hapmap]
rs4402495	0.91[ASN][1000 genomes]
rs4775018	0.88[CEU][hapmap]
rs57649249	0.88[ASN][1000 genomes]
rs66597610	0.84[AMR][1000 genomes]
rs67026867	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67047612	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67215667	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67690745	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7164935	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7174254	0.86[ASN][1000 genomes]
rs7181221	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7496568	0.88[CEU][hapmap]
rs755079	0.80[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[ASN][1000 genomes]
rs8025888	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv904264	chr15:58505122-58588510	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv904265	chr15:58517528-58588510	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58521200-58524400	Weak transcription	Pancreas	Pancrea
2	chr15:58521400-58525400	Weak transcription	Hela-S3	cervix
3	chr15:58521400-58534200	Weak transcription	Liver	Liver
4	chr15:58522000-58525600	Weak transcription	A549	lung
5	chr15:58522400-58524400	Weak transcription	HSMM	muscle
6	chr15:58522400-58526200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:58522400-58528400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:58522600-58524200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:58522600-58526200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:58522600-58526200	Weak transcription	HSMMtube	muscle
11	chr15:58522800-58526000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:58522800-58532200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:58523000-58524200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:58523200-58524200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr15:58523200-58524200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:58523200-58524400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:58523200-58524400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:58523200-58524400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr15:58523200-58524400	Weak transcription	Fetal Thymus	thymus
20	chr15:58523200-58524400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:58523200-58524600	Weak transcription	Right Atrium	heart
22	chr15:58523200-58528200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:58523200-58531200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:58523200-58537800	Weak transcription	Left Ventricle	heart
25	chr15:58523600-58524800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:58523600-58526600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:58523800-58524400	Enhancers	NHEK	skin
28	chr15:58523800-58525600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:58524000-58524400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr15:58524000-58524800	Enhancers	Psoas Muscle	Psoas
31	chr15:58524000-58525000	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr15:58524000-58526400	Enhancers	HMEC	breast

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