Variant report

Variant	rs2415187
Chromosome Location	chr15:74269527-74269528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74265716..74267266-chr15:74269225..74271894,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12324082	0.93[ASN][1000 genomes]
rs12324916	0.93[ASN][1000 genomes]
rs16958591	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1984525	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289411	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289412	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289413	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301272	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301273	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28491832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28501585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28642322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28664814	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784560	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7495728	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8023773	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8038882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040503	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042532	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9920026	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74265800-74271600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:74265800-74272600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:74265800-74273800	Weak transcription	Spleen	Spleen
4	chr15:74265800-74273800	Weak transcription	HMEC	breast
5	chr15:74265800-74274000	Weak transcription	Right Ventricle	heart
6	chr15:74265800-74274200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:74265800-74275800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:74266000-74273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:74267200-74277000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:74268400-74270600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:74268400-74270600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:74268400-74273800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:74268600-74271400	Weak transcription	GM12878-XiMat	blood
14	chr15:74268600-74273000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr15:74268600-74273800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:74268600-74273800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:74268600-74273800	Weak transcription	NHEK	skin
18	chr15:74268800-74272400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:74268800-74272800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr15:74268800-74273000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr15:74268800-74273000	Weak transcription	Fetal Thymus	thymus
22	chr15:74268800-74273800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:74268800-74273800	Weak transcription	Thymus	Thymus
24	chr15:74268800-74273800	Weak transcription	NHLF	lung
25	chr15:74268800-74274200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr15:74269000-74272000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:74269000-74272800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr15:74269000-74272800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:74269400-74272000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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