Variant report

Variant	rs28642322
Chromosome Location	chr15:74272190-74272191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74269620..74272982-chr15:74277388..74280849,3	MCF-7	breast:
2	chr15:74270540..74273109-chr15:74273687..74276918,3	K562	blood:
3	chr15:74269606..74273109-chr15:74273492..74276918,5	K562	blood:

Variant related genes	Relation type
ENSG00000067221	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12324082	0.93[ASN][1000 genomes]
rs12324916	0.93[ASN][1000 genomes]
rs16958591	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1984525	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289411	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289413	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415187	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28491832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28501585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28664814	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784560	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7495728	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8023773	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8038882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040503	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042532	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9920026	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74265800-74272600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:74265800-74273800	Weak transcription	Spleen	Spleen
3	chr15:74265800-74273800	Weak transcription	HMEC	breast
4	chr15:74265800-74274000	Weak transcription	Right Ventricle	heart
5	chr15:74265800-74274200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:74265800-74275800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:74266000-74273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:74267200-74277000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:74268400-74273800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:74268600-74273000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr15:74268600-74273800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:74268600-74273800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:74268600-74273800	Weak transcription	NHEK	skin
14	chr15:74268800-74272400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:74268800-74272800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr15:74268800-74273000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr15:74268800-74273000	Weak transcription	Fetal Thymus	thymus
18	chr15:74268800-74273800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:74268800-74273800	Weak transcription	Thymus	Thymus
20	chr15:74268800-74273800	Weak transcription	NHLF	lung
21	chr15:74268800-74274200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:74269000-74272800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:74269000-74272800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:74271000-74272400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr15:74271400-74272400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:74271400-74274000	Enhancers	GM12878-XiMat	blood
27	chr15:74271600-74272200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:74271600-74273800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:74271600-74273800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:74271800-74274600	Weak transcription	Brain Germinal Matrix	brain
31	chr15:74271800-74274800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:74272000-74272200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:74272000-74274000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:74272000-74274600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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