Variant report

Variant	rs28491832
Chromosome Location	chr15:74265363-74265364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74265166..74265894-chr15:74614554..74615483,3	MCF-7	breast:
2	chr15:74265011..74265899-chr15:74328914..74329841,6	MCF-7	breast:
3	chr15:74264988..74266186-chr15:74328671..74329935,19	MCF-7	breast:
4	chr15:74264224..74266446-chr15:74328782..74330811,3	MCF-7	breast:
5	chr15:74264934..74266005-chr15:74613059..74613675,3	K562	blood:
6	chr15:74264982..74265988-chr15:74340408..74341918,5	K562	blood:
7	chr15:74265009..74265857-chr15:74419604..74420496,4	MCF-7	breast:
8	chr15:74265318..74265924-chr15:74340447..74341070,3	MCF-7	breast:
9	chr15:74264967..74265911-chr15:74346172..74346877,2	MCF-7	breast:
10	chr15:74265025..74265814-chr15:74329334..74329841,2	K562	blood:
11	chr15:74243183..74244059-chr15:74264991..74265553,2	K562	blood:
12	chr15:74219625..74221296-chr15:74263659..74265762,2	MCF-7	breast:
13	chr15:74265052..74265856-chr15:74340481..74341404,2	MCF-7	breast:
14	chr15:74264969..74265882-chr15:74419546..74420074,2	K562	blood:
15	chr15:74263373..74266243-chr15:74284583..74286216,2	MCF-7	breast:
16	chr15:74247792..74250200-chr15:74264294..74267250,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000167178	Chromatin interaction
ENSG00000261801	Chromatin interaction
ENSG00000067221	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12324082	0.93[ASN][1000 genomes]
rs12324916	0.93[ASN][1000 genomes]
rs16958591	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1984525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289411	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289413	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415187	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28501585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28642322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28664814	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784560	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7495728	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8023773	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8038882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040503	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042532	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9920026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74259600-74265400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr15:74264400-74265800	Enhancers	Esophagus	oesophagus
3	chr15:74264400-74266000	Enhancers	Placenta	Placenta
4	chr15:74264800-74265600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr15:74264800-74265800	Enhancers	HMEC	breast
6	chr15:74264800-74265800	Enhancers	HUVEC	blood vessel
7	chr15:74265000-74265400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr15:74265000-74265400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr15:74265000-74265400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:74265000-74265400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:74265000-74265400	Enhancers	Primary hematopoietic stem cells	blood
12	chr15:74265000-74265400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr15:74265000-74265400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:74265000-74265400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:74265000-74265400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:74265000-74265400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr15:74265000-74265400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:74265000-74265400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:74265000-74265400	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr15:74265000-74265400	Enhancers	Fetal Muscle Leg	muscle
21	chr15:74265000-74265400	Flanking Active TSS	A549	lung
22	chr15:74265000-74265400	Enhancers	NH-A	brain
23	chr15:74265000-74265600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:74265000-74265600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
25	chr15:74265000-74265600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr15:74265000-74265600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr15:74265000-74265600	Enhancers	HSMM	muscle
28	chr15:74265000-74265800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:74265000-74265800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:74265000-74265800	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr15:74265000-74265800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr15:74265000-74265800	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr15:74265000-74265800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr15:74265000-74265800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:74265000-74265800	Enhancers	Liver	Liver
36	chr15:74265000-74265800	Enhancers	Fetal Brain Male	brain
37	chr15:74265000-74265800	Enhancers	Fetal Heart	heart
38	chr15:74265000-74265800	Enhancers	Fetal Intestine Small	intestine
39	chr15:74265000-74265800	Enhancers	Fetal Thymus	thymus
40	chr15:74265000-74265800	Enhancers	Stomach Mucosa	stomach
41	chr15:74265000-74265800	Enhancers	Thymus	Thymus
42	chr15:74265000-74265800	Enhancers	HSMMtube	muscle
43	chr15:74265000-74265800	Flanking Active TSS	NHEK	skin
44	chr15:74265000-74265800	Enhancers	NHLF	lung
45	chr15:74265000-74266000	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr15:74265000-74266000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:74265000-74266000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:74265000-74266000	Enhancers	Fetal Muscle Trunk	muscle
49	chr15:74265200-74265400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
50	chr15:74265200-74265400	Flanking Active TSS	H9 Cell Line	embryonic stem cell

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