Variant report

Variant	rs8042532
Chromosome Location	chr15:74255230-74255231
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1984525	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1984526	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2289411	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2289412	0.90[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2289413	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2301272	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2301273	0.90[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2415187	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28491832	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28501585	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28642322	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28664814	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3784560	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8023773	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8038882	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8039455	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8040503	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9920026	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74245400-74257400	Weak transcription	Fetal Lung	lung
2	chr15:74248200-74257200	Weak transcription	Right Ventricle	heart
3	chr15:74249400-74257400	Weak transcription	Adipose Nuclei	Adipose
4	chr15:74249800-74257400	Weak transcription	A549	lung
5	chr15:74250000-74257200	Weak transcription	Gastric	stomach
6	chr15:74250200-74257400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:74251800-74256400	Weak transcription	Fetal Brain Female	brain
8	chr15:74251800-74257200	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:74252000-74256600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:74252000-74257200	Weak transcription	Stomach Mucosa	stomach
11	chr15:74252200-74257200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:74252200-74257200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:74252400-74256600	Weak transcription	GM12878-XiMat	blood
14	chr15:74252400-74257000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:74252400-74257000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:74252400-74257000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr15:74252400-74257000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:74252400-74257000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:74252400-74257200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:74252400-74257200	Weak transcription	Primary B cells from cord blood	blood
21	chr15:74252400-74257200	Weak transcription	Fetal Muscle Leg	muscle
22	chr15:74252400-74257200	Weak transcription	Placenta	Placenta
23	chr15:74252400-74257200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:74252400-74257200	Weak transcription	HMEC	breast
25	chr15:74252400-74257200	Weak transcription	HSMM	muscle
26	chr15:74252400-74257200	Weak transcription	NH-A	brain
27	chr15:74252400-74257200	Weak transcription	NHLF	lung
28	chr15:74252400-74257400	Weak transcription	NHDF-Ad	bronchial
29	chr15:74252600-74256400	Weak transcription	Primary T cells from cord blood	blood
30	chr15:74252600-74257000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr15:74252600-74257200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:74252600-74257200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:74252800-74256400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:74252800-74257200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:74252800-74257200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:74253000-74256400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr15:74253000-74256400	Weak transcription	Dnd41	blood
38	chr15:74253000-74257200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr15:74253000-74257200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr15:74253400-74257000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr15:74253800-74256400	Weak transcription	Thymus	Thymus
42	chr15:74254200-74255400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:74254200-74256400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:74254200-74256400	Weak transcription	Fetal Thymus	thymus
45	chr15:74254600-74257200	Weak transcription	Fetal Brain Male	brain
46	chr15:74254800-74257400	Weak transcription	Spleen	Spleen
47	chr15:74255000-74255800	Enhancers	HUVEC	blood vessel
48	chr15:74255000-74257200	Weak transcription	Osteobl	bone
49	chr15:74255200-74256600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr15:74255200-74257400	Weak transcription	Muscle Satellite Cultured Cells	--

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