Variant report

Variant	rs241756
Chromosome Location	chr22:33344444-33344445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32846948-32860159..22:33339333-33353583	K562	blood:

Variant related genes	Relation type
ENSG00000184459	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs133924	0.84[ASN][1000 genomes]
rs133926	0.85[ASN][1000 genomes]
rs133927	0.85[ASN][1000 genomes]
rs133929	0.83[ASN][1000 genomes]
rs133931	0.83[ASN][1000 genomes]
rs1365837	0.83[ASN][1000 genomes]
rs137552	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241707	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241708	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241709	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241711	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241712	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241714	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241715	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241717	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241721	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241722	0.85[ASN][1000 genomes]
rs241732	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241757	0.85[ASN][1000 genomes]
rs241758	0.85[ASN][1000 genomes]
rs241759	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241760	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241763	0.80[ASN][1000 genomes]
rs241764	0.82[ASN][1000 genomes]
rs241766	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs241767	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4518061	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5754350	0.84[ASN][1000 genomes]
rs5998684	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71187221	0.89[ASN][1000 genomes]
rs9609676	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33338000-33345200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr22:33340200-33346000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33341600-33349600	Weak transcription	Fetal Brain Male	brain
5	chr22:33343000-33345600	Weak transcription	Fetal Kidney	kidney
6	chr22:33343000-33347000	Enhancers	Fetal Intestine Small	intestine
7	chr22:33343200-33345000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr22:33343200-33345800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr22:33343200-33347400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr22:33343200-33372600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr22:33343600-33346800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr22:33343600-33353000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr22:33344000-33345000	Weak transcription	Fetal Heart	heart
14	chr22:33344200-33346400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr22:33344200-33360400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr22:33344400-33345400	Weak transcription	Fetal Intestine Large	intestine
17	chr22:33344400-33345800	Weak transcription	Duodenum Mucosa	Duodenum

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