Variant report

Variant	rs5754350
Chromosome Location	chr22:33341881-33341882
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs133925	0.83[ASN][1000 genomes]
rs137552	0.82[ASN][1000 genomes]
rs241725	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241727	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241729	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241731	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241756	0.84[ASN][1000 genomes]
rs241757	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241758	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241759	0.84[ASN][1000 genomes]
rs241760	0.84[ASN][1000 genomes]
rs241763	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241764	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs241765	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs241873	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4518061	0.85[ASN][1000 genomes]
rs5754351	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5754366	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33331400-33342800	Weak transcription	Fetal Heart	heart
3	chr22:33338000-33345200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33340200-33346000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr22:33341600-33349600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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