Variant report

Variant	rs241763
Chromosome Location	chr22:33358980-33358981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs133925	0.82[ASN][1000 genomes]
rs241725	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241727	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241729	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs241731	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241756	0.80[ASN][1000 genomes]
rs241757	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241758	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241759	0.80[ASN][1000 genomes]
rs241760	0.80[ASN][1000 genomes]
rs241764	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241765	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs241766	0.81[ASN][1000 genomes]
rs241767	0.80[ASN][1000 genomes]
rs241873	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5754350	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5754351	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5754366	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33343200-33372600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33344200-33360400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr22:33347600-33360600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr22:33348000-33382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr22:33351600-33360600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr22:33354000-33361000	Weak transcription	Fetal Intestine Large	intestine
8	chr22:33354000-33363400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr22:33354000-33374000	Weak transcription	Brain Angular Gyrus	brain
10	chr22:33354200-33360000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr22:33354200-33361000	Weak transcription	Esophagus	oesophagus
12	chr22:33354200-33361000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr22:33354400-33359800	Weak transcription	Spleen	Spleen
14	chr22:33354400-33360800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr22:33354400-33360800	Weak transcription	Left Ventricle	heart
16	chr22:33354400-33362200	Weak transcription	Fetal Kidney	kidney
17	chr22:33354400-33363000	Weak transcription	Lung	lung
18	chr22:33354400-33363800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr22:33354400-33381800	Weak transcription	Fetal Brain Male	brain
20	chr22:33354600-33387400	Weak transcription	Fetal Brain Female	brain
21	chr22:33354800-33359800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr22:33354800-33363200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr22:33355000-33362400	Weak transcription	Placenta	Placenta
24	chr22:33355000-33363600	Weak transcription	Right Atrium	heart
25	chr22:33355200-33361000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr22:33357800-33362000	Weak transcription	HepG2	liver
27	chr22:33358000-33359600	Weak transcription	Fetal Lung	lung
28	chr22:33358000-33359600	Weak transcription	Fetal Stomach	stomach
29	chr22:33358000-33360600	Weak transcription	Fetal Heart	heart
30	chr22:33358400-33360400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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