Variant report

Variant	rs241766
Chromosome Location	chr22:33362627-33362628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs133924	0.89[ASN][1000 genomes]
rs133926	0.90[ASN][1000 genomes]
rs133927	0.90[ASN][1000 genomes]
rs133929	0.88[ASN][1000 genomes]
rs133931	0.88[ASN][1000 genomes]
rs133934	0.84[ASN][1000 genomes]
rs133936	0.84[ASN][1000 genomes]
rs133937	0.84[ASN][1000 genomes]
rs133938	0.84[ASN][1000 genomes]
rs1365837	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs137552	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241707	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241708	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241709	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241711	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241712	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241714	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241715	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241717	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241721	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241722	0.88[ASN][1000 genomes]
rs241725	0.84[ASN][1000 genomes]
rs241727	0.81[ASN][1000 genomes]
rs241731	0.80[ASN][1000 genomes]
rs241732	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241756	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs241757	0.81[ASN][1000 genomes]
rs241758	0.81[ASN][1000 genomes]
rs241759	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs241760	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs241763	0.81[ASN][1000 genomes]
rs241764	0.83[ASN][1000 genomes]
rs241767	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4518061	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs470004	0.84[ASN][1000 genomes]
rs5754366	0.80[ASN][1000 genomes]
rs5998684	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71187221	0.84[ASN][1000 genomes]
rs9609676	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33343200-33372600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33348000-33382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:33354000-33363400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr22:33354000-33374000	Weak transcription	Brain Angular Gyrus	brain
6	chr22:33354400-33363000	Weak transcription	Lung	lung
7	chr22:33354400-33363800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr22:33354400-33381800	Weak transcription	Fetal Brain Male	brain
9	chr22:33354600-33387400	Weak transcription	Fetal Brain Female	brain
10	chr22:33354800-33363200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr22:33355000-33363600	Weak transcription	Right Atrium	heart
12	chr22:33359800-33363600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr22:33360000-33363200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr22:33360000-33363600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr22:33360800-33363000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr22:33361000-33363000	Weak transcription	Fetal Stomach	stomach
17	chr22:33361000-33363000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr22:33361000-33363400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr22:33361000-33363400	Weak transcription	Fetal Heart	heart
20	chr22:33361000-33371400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr22:33361000-33380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr22:33361200-33363000	Weak transcription	Fetal Lung	lung
23	chr22:33361200-33363400	Weak transcription	Colon Smooth Muscle	Colon
24	chr22:33361200-33363800	Weak transcription	Left Ventricle	heart
25	chr22:33361200-33368400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr22:33361600-33363600	Weak transcription	Brain Hippocampus Middle	brain
27	chr22:33362000-33363200	Enhancers	HepG2	liver
28	chr22:33362200-33364400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr22:33362200-33365800	Enhancers	Duodenum Mucosa	Duodenum
30	chr22:33362200-33365800	Enhancers	Fetal Intestine Small	intestine
31	chr22:33362200-33366400	Enhancers	Fetal Intestine Large	intestine
32	chr22:33362400-33362800	Weak transcription	Fetal Kidney	kidney
33	chr22:33362400-33363800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr22:33362400-33365800	Enhancers	Liver	Liver
35	chr22:33362600-33363800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links