Variant report

Variant	rs5754366
Chromosome Location	chr22:33377556-33377557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33376392..33378226-chr22:33378707..33381448,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs133925	0.92[ASN][1000 genomes]
rs133926	0.80[ASN][1000 genomes]
rs133927	0.80[ASN][1000 genomes]
rs241707	0.85[ASN][1000 genomes]
rs241708	0.85[ASN][1000 genomes]
rs241709	0.85[ASN][1000 genomes]
rs241711	0.85[ASN][1000 genomes]
rs241712	0.85[ASN][1000 genomes]
rs241714	0.85[ASN][1000 genomes]
rs241715	0.85[ASN][1000 genomes]
rs241717	0.83[ASN][1000 genomes]
rs241721	0.85[ASN][1000 genomes]
rs241725	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs241727	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241729	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241731	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241732	0.85[ASN][1000 genomes]
rs241757	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241758	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241763	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241764	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241765	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241766	0.80[ASN][1000 genomes]
rs241767	0.81[ASN][1000 genomes]
rs241873	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5754350	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5754351	0.84[EUR][1000 genomes]
rs5998684	0.81[ASN][1000 genomes]
rs9609676	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33348000-33382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:33354400-33381800	Weak transcription	Fetal Brain Male	brain
4	chr22:33354600-33387400	Weak transcription	Fetal Brain Female	brain
5	chr22:33361000-33380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:33368800-33381800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr22:33374000-33381800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr22:33374400-33380400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr22:33374600-33381800	Weak transcription	Brain Angular Gyrus	brain
10	chr22:33374800-33381200	Weak transcription	Lung	lung
11	chr22:33376000-33380400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr22:33376200-33381800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr22:33376200-33381800	Weak transcription	HepG2	liver
14	chr22:33376200-33382400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr22:33376400-33380400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr22:33376400-33381800	Weak transcription	Liver	Liver
17	chr22:33376600-33382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr22:33376800-33378600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr22:33376800-33378800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr22:33376800-33380200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr22:33376800-33381800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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