Variant report

Variant	rs241873
Chromosome Location	chr22:33334492-33334493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs241725	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs241727	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs241729	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs241731	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241757	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241758	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241763	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs241764	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241765	0.86[EUR][1000 genomes]
rs5754350	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5754351	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5754366	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33328600-33335400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr22:33328800-33334600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33329200-33336000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr22:33331400-33342800	Weak transcription	Fetal Heart	heart
6	chr22:33332600-33336600	Weak transcription	HepG2	liver
7	chr22:33333800-33334600	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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