Variant report
| Variant | rs2446446 |
|---|---|
| Chromosome Location | chr8:67171520-67171521 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:67171301..67174533-chr8:67175570..67177832,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11775809 | 0.83[ASN][1000 genomes] |
| rs11776808 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11784744 | 0.82[EUR][1000 genomes] |
| rs2446442 | 0.83[ASN][1000 genomes] |
| rs2446443 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2446447 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2446449 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2469256 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2469257 | 0.83[ASN][1000 genomes] |
| rs2469258 | 0.83[ASN][1000 genomes] |
| rs2469261 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2469265 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2469267 | 0.83[ASN][1000 genomes] |
| rs2469268 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2469270 | 0.82[ASN][1000 genomes] |
| rs2469272 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2469273 | 0.83[ASN][1000 genomes] |
| rs2469274 | 0.83[ASN][1000 genomes] |
| rs2469283 | 0.83[ASN][1000 genomes] |
| rs2469285 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2469291 | 0.83[ASN][1000 genomes] |
| rs2469292 | 0.83[ASN][1000 genomes] |
| rs2469293 | 0.82[ASN][1000 genomes] |
| rs2469294 | 0.83[ASN][1000 genomes] |
| rs2469303 | 0.81[ASN][1000 genomes] |
| rs4737769 | 0.86[EUR][1000 genomes] |
| rs56026833 | 0.83[ASN][1000 genomes] |
| rs56054054 | 0.83[ASN][1000 genomes] |
| rs936430 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9792363 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | esv3414665 | chr8:66936816-67381935 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 3 | esv3327342 | chr8:67137447-67171527 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:67167600-67171600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
