Variant report

Variant	rs2469261
Chromosome Location	chr8:67170071-67170072
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11775809	0.90[ASN][1000 genomes]
rs11776808	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11782521	0.84[EUR][1000 genomes]
rs11784744	0.94[EUR][1000 genomes]
rs13278591	0.80[AFR][1000 genomes]
rs2446442	0.90[ASN][1000 genomes]
rs2446443	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2446446	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2446447	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2446449	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2469254	0.82[ASN][1000 genomes]
rs2469256	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2469257	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2469258	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2469265	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469267	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2469268	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469270	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2469271	0.81[EUR][1000 genomes]
rs2469272	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2469273	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2469274	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2469283	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2469285	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2469291	0.90[ASN][1000 genomes]
rs2469292	0.90[ASN][1000 genomes]
rs2469293	0.89[ASN][1000 genomes]
rs2469294	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2469303	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4737769	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs56026833	0.90[ASN][1000 genomes]
rs56054054	0.90[ASN][1000 genomes]
rs936430	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9792363	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3327342	chr8:67137447-67171527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67167600-67171600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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