Variant report

Variant	rs2469292
Chromosome Location	chr8:67149734-67149735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11775809	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776808	0.81[ASN][1000 genomes]
rs11784558	0.89[EUR][1000 genomes]
rs2446435	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2446436	0.94[EUR][1000 genomes]
rs2446437	0.94[EUR][1000 genomes]
rs2446439	0.88[ASN][1000 genomes]
rs2446441	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2446442	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2446443	0.88[ASN][1000 genomes]
rs2446444	0.89[EUR][1000 genomes]
rs2446445	0.87[EUR][1000 genomes]
rs2446446	0.83[ASN][1000 genomes]
rs2446447	0.89[ASN][1000 genomes]
rs2446449	0.85[ASN][1000 genomes]
rs2469254	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2469256	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469257	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469258	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469259	0.89[EUR][1000 genomes]
rs2469260	0.89[EUR][1000 genomes]
rs2469261	0.90[ASN][1000 genomes]
rs2469262	0.88[EUR][1000 genomes]
rs2469263	0.88[EUR][1000 genomes]
rs2469265	0.90[ASN][1000 genomes]
rs2469267	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469268	0.90[ASN][1000 genomes]
rs2469269	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2469270	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2469271	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2469273	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469274	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469275	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2469276	0.94[EUR][1000 genomes]
rs2469277	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2469283	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469284	0.89[EUR][1000 genomes]
rs2469285	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469286	0.89[EUR][1000 genomes]
rs2469287	0.88[EUR][1000 genomes]
rs2469291	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469293	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2469294	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469295	0.94[EUR][1000 genomes]
rs2469296	0.94[EUR][1000 genomes]
rs2469297	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2469298	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2469299	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2469301	0.94[EUR][1000 genomes]
rs2469303	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110302	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56026833	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054054	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511880	0.87[EUR][1000 genomes]
rs7816372	0.90[EUR][1000 genomes]
rs936430	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954519	0.94[EUR][1000 genomes]
rs954520	0.94[EUR][1000 genomes]
rs9792363	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3343837	chr8:67137447-67168780	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3327342	chr8:67137447-67171527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3480491	chr8:67149298-67149941	Strong transcription Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv3480492	chr8:67149298-67149941	Strong transcription Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67149200-67150800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67149400-67151000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:67149400-67151200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:67149600-67149800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:67149600-67151000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links