Variant report
| Variant | rs2451842 |
|---|---|
| Chromosome Location | chr5:68364847-68364848 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CCDC125-12 | chr5:68364752-68365027 | NONHSAT101884 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10076029 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10078783 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10214127 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1614459 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs164562 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs164797 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs164800 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs164803 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs164804 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1650757 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs171255 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs181332 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2560455 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs338675 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs351445 | 0.91[ASN][1000 genomes] |
| rs351446 | 0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs353665 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs52131 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs59329087 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs59426373 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs67248682 | 0.83[EUR][1000 genomes] |
| rs72765813 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv968920 | chr5:68350235-68371417 | Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:68360200-68370200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
