Variant report

Variant	rs59426373
Chromosome Location	chr5:68326898-68326899
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr5:68325287-68327472	SK-N-SH	brain:	n/a	chr5:68325327-68325341 chr5:68325331-68325340
2	GATA3	chr5:68326333-68326982	SH-SY5Y	brain:	n/a	n/a
3	RFX5	chr5:68325442-68327442	SK-N-SH	brain:	n/a	n/a
4	JUN	chr5:68326178-68327018	K562	blood:	n/a	chr5:68326650-68326659 chr5:68326646-68326659
5	GATA3	chr5:68326429-68326951	SK-N-SH	brain:	n/a	n/a
6	POLR2A	chr5:68326442-68326992	H1-neurons	neurons:	n/a	n/a
7	KAP1	chr5:68326565-68326965	HEK293	kidney:	n/a	n/a
8	MXI1	chr5:68325964-68327355	SK-N-SH	brain:	n/a	n/a
9	REST	chr5:68326432-68327037	H1-neurons	neurons:	n/a	n/a
10	MYC	chr5:68326533-68326904	K562	blood:	n/a	n/a
11	REST	chr5:68326179-68327149	H1-neurons	neurons:	n/a	n/a
12	GATA2	chr5:68326460-68326948	SH-SY5Y	brain:	n/a	n/a
13	JUND	chr5:68326232-68327046	SK-N-SH	brain:	n/a	chr5:68326650-68326659

Variant related genes	Relation type
ENSG00000249352	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10076029	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10078783	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10214127	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1614459	0.87[EUR][1000 genomes]
rs164562	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs164797	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs164800	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164803	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs164804	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1650757	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs171255	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs181332	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2451842	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2560455	0.83[EUR][1000 genomes]
rs338675	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351446	0.86[EUR][1000 genomes]
rs353665	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs52131	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59329087	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67248682	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72765813	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68320400-68327000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:68325000-68327000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:68326200-68327200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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