Variant report
| Variant | rs67248682 |
|---|---|
| Chromosome Location | chr5:68321160-68321161 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:68321072..68322960-chr5:68665104..68666659,2 | K562 | blood: | |
| 2 | chr5:68319293..68321703-chr5:68323264..68324934,2 | K562 | blood: | |
| 3 | chr5:68321118..68323616-chr5:68341647..68343951,2 | MCF-7 | breast: | |
| 4 | chr5:68320167..68322088-chr5:68342197..68344022,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000085231 | Chromatin interaction |
| ENSG00000152942 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10076029 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10078783 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10214127 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1614459 | 0.83[EUR][1000 genomes] |
| rs164562 | 0.88[EUR][1000 genomes] |
| rs164797 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs164800 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs164803 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs164804 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1650757 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs171255 | 0.89[EUR][1000 genomes] |
| rs181332 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2451842 | 0.83[EUR][1000 genomes] |
| rs338675 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs351446 | 0.82[EUR][1000 genomes] |
| rs353665 | 0.91[EUR][1000 genomes] |
| rs52131 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs59329087 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs59426373 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72765813 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3471635 | chr5:68319062-68321290 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3471636 | chr5:68319062-68321290 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv598421 | chr5:68319593-68321247 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:68320400-68327000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
