Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr5:68325287-68327472	SK-N-SH	brain:	n/a	chr5:68325327-68325341 chr5:68325331-68325340
2	RFX5	chr5:68325442-68327442	SK-N-SH	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC125-4	chr5:68325615-68325992	XLOC_004860

Variant related genes	Relation type
ENSG00000249352	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10076029	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078783	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10214127	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1614459	0.87[EUR][1000 genomes]
rs164562	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs164797	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs164800	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs164803	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs164804	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1650757	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs171255	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs181332	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2451842	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2560455	0.83[EUR][1000 genomes]
rs338675	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs351446	0.86[EUR][1000 genomes]
rs353665	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs52131	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59426373	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67248682	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72765813	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68320400-68327000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:68325000-68327000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:68325400-68326800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:68325800-68326400	Enhancers	Brain Cingulate Gyrus	brain
5	chr5:68325800-68326400	Enhancers	Brain Hippocampus Middle	brain
6	chr5:68325800-68326800	Enhancers	Brain Substantia Nigra	brain

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