Variant report

Variant	rs245464
Chromosome Location	chr5:57643108-57643109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs151807	0.94[JPT][hapmap]
rs151914	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs181764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184999	0.85[JPT][hapmap]
rs190304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245481	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs245491	0.87[GIH][hapmap];0.91[JPT][hapmap]
rs246113	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs27209	0.92[ASN][1000 genomes]
rs2910578	0.84[JPT][hapmap]
rs2910606	0.80[ASW][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs2964198	0.80[ASW][hapmap]
rs37491	0.81[ASW][hapmap]
rs37518	0.80[ASW][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap]
rs37535	0.87[GIH][hapmap];0.91[JPT][hapmap]
rs37537	0.87[GIH][hapmap];0.85[JPT][hapmap]
rs41385	0.81[JPT][hapmap]
rs42964	0.91[JPT][hapmap]
rs7715909	0.80[ASW][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57635400-57645600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:57642200-57649400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:57642800-57644800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:57642800-57645400	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links