Variant report

Variant	rs2456910
Chromosome Location	chr1:69554417-69554418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2484870	0.87[AFR][1000 genomes]
rs2494928	0.84[AFR][1000 genomes]
rs2494930	0.88[AFR][1000 genomes]
rs2661468	0.89[AFR][1000 genomes]
rs2784823	0.86[AFR][1000 genomes]
rs2842050	0.82[AFR][1000 genomes]
rs3123012	0.89[AFR][1000 genomes]
rs4415518	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2456910	SLC35D1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69535800-69557000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:69552400-69554600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:69552400-69558800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:69553000-69557000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:69553200-69555000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:69554000-69555800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:69554200-69555400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:69554400-69554600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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