Variant report

Variant	rs3123012
Chromosome Location	chr1:69558139-69558140
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11209393	0.86[ASN][1000 genomes]
rs12083168	0.83[ASN][1000 genomes]
rs1414663	0.84[EUR][1000 genomes]
rs2456910	0.89[AFR][1000 genomes]
rs2484869	0.87[ASN][1000 genomes]
rs2484870	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2494928	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2494930	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2661464	0.92[ASN][1000 genomes]
rs2661465	0.92[ASN][1000 genomes]
rs2661466	0.92[ASN][1000 genomes]
rs2661468	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2784823	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2842047	0.86[ASN][1000 genomes]
rs2842050	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2842052	0.92[ASN][1000 genomes]
rs2842053	0.92[ASN][1000 genomes]
rs4415518	0.87[AFR][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Clozapine-induced agranulocytosis	25187353	GWAS catalog

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69552400-69558800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:69557600-69558800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:69557600-69562800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:69557800-69558800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:69557800-69559200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:69558000-69558400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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