Variant report

Variant	rs12083168
Chromosome Location	chr1:69603894-69603895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11209393	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2484869	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2484870	0.86[ASN][1000 genomes]
rs2494928	0.92[ASN][1000 genomes]
rs2494930	0.88[ASN][1000 genomes]
rs2661464	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2661465	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2661466	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2661468	0.88[ASN][1000 genomes]
rs2784823	0.94[ASN][1000 genomes]
rs2842047	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2842050	0.92[ASN][1000 genomes]
rs2842052	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2842053	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3123012	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830115	chr1:69593494-69736995	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69603600-69604000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:69603600-69604000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:69603600-69604000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:69603600-69604000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:69603800-69604200	Enhancers	Fetal Brain Male	brain
6	chr1:69603800-69605800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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