Variant report

Variant	rs2661465
Chromosome Location	chr1:69547352-69547353
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11209393	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12083168	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2484869	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2484870	0.83[ASN][1000 genomes]
rs2494928	0.89[ASN][1000 genomes]
rs2494930	0.97[ASN][1000 genomes]
rs2661464	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2661466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2661468	0.97[ASN][1000 genomes]
rs2784823	0.91[ASN][1000 genomes]
rs2842047	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2842050	0.92[ASN][1000 genomes]
rs2842052	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842053	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123012	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508271	chr1:69522722-69547369	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69535800-69557000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:69543600-69553200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:69543800-69547400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:69544000-69547400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:69544600-69550800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:69546400-69548800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:69546400-69549200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:69546600-69548600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:69546600-69549200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:69546600-69549200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:69546800-69547800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:69546800-69548600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:69546800-69548800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:69547200-69547800	Enhancers	Adipose Nuclei	Adipose
15	chr1:69547200-69548000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:69547200-69548400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:69547200-69549200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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