Variant report

Variant	rs2494930
Chromosome Location	chr1:69562031-69562032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11209393	0.92[ASN][1000 genomes]
rs12083168	0.88[ASN][1000 genomes]
rs1414663	0.87[EUR][1000 genomes]
rs2456910	0.88[AFR][1000 genomes]
rs2484869	0.92[ASN][1000 genomes]
rs2484870	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2494928	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2661464	0.97[ASN][1000 genomes]
rs2661465	0.97[ASN][1000 genomes]
rs2661466	0.97[ASN][1000 genomes]
rs2661468	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784823	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2842047	0.92[ASN][1000 genomes]
rs2842050	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2842052	0.97[ASN][1000 genomes]
rs2842053	0.97[ASN][1000 genomes]
rs3123012	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4415518	0.90[AFR][1000 genomes]
rs7525958	0.82[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2494930	NEGR1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69557600-69562800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:69559600-69567000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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