Variant report

Variant	rs11209393
Chromosome Location	chr1:69594956-69594957
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12083168	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2484869	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2484870	0.90[ASN][1000 genomes]
rs2494928	0.96[ASN][1000 genomes]
rs2494930	0.92[ASN][1000 genomes]
rs2661464	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2661465	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2661466	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2661468	0.92[ASN][1000 genomes]
rs2784823	0.98[ASN][1000 genomes]
rs2842047	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842050	0.96[ASN][1000 genomes]
rs2842052	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2842053	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3123012	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830115	chr1:69593494-69736995	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69586400-69596800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:69592400-69595600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:69593200-69595000	Enhancers	Fetal Heart	heart
4	chr1:69593200-69595200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:69593600-69595600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:69593600-69595600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:69593800-69595800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:69594000-69595000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:69594000-69595200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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