Variant report

Variant	rs2842053
Chromosome Location	chr1:69551411-69551412
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11209393	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12083168	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2484869	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2484870	0.83[ASN][1000 genomes]
rs2494928	0.89[ASN][1000 genomes]
rs2494930	0.97[ASN][1000 genomes]
rs2661464	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2661465	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2661466	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2661468	0.97[ASN][1000 genomes]
rs2784823	0.91[ASN][1000 genomes]
rs2842047	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2842050	0.92[ASN][1000 genomes]
rs2842052	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123012	0.92[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69535800-69557000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:69543600-69553200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:69548600-69551800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:69548600-69552000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:69549200-69551800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:69549200-69552000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:69550200-69553600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:69550400-69551800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:69550600-69553200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:69550800-69552400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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