Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11209393	0.96[ASN][1000 genomes]
rs12083168	0.92[ASN][1000 genomes]
rs1414663	0.89[EUR][1000 genomes]
rs1948982	0.82[AFR][1000 genomes]
rs2456910	0.84[AFR][1000 genomes]
rs2484869	0.97[ASN][1000 genomes]
rs2484870	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2494930	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2661464	0.89[ASN][1000 genomes]
rs2661465	0.89[ASN][1000 genomes]
rs2661466	0.89[ASN][1000 genomes]
rs2661468	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2784823	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2842047	0.96[ASN][1000 genomes]
rs2842050	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2842052	0.89[ASN][1000 genomes]
rs2842053	0.89[ASN][1000 genomes]
rs3123012	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4415518	0.90[AFR][1000 genomes]
rs7525958	0.84[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2494928	NEGR1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69569800-69575000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:69570000-69570800	Enhancers	Brain Cingulate Gyrus	brain
3	chr1:69570000-69575000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:69570000-69575000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:69570200-69571400	Enhancers	Fetal Brain Male	brain
6	chr1:69570200-69574800	Weak transcription	NHEK	skin
7	chr1:69570200-69575000	Weak transcription	HMEC	breast

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