Variant report

Variant	rs2460766
Chromosome Location	chr2:187589799-187589800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10165992	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10755000	0.85[EUR][1000 genomes]
rs12618322	0.83[EUR][1000 genomes]
rs13028008	0.85[EUR][1000 genomes]
rs2121976	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2595395	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2682863	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2682868	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2682873	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55961288	0.84[EUR][1000 genomes]
rs9789704	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187584400-187590400	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:187584600-187590200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:187584600-187590600	Weak transcription	Fetal Brain Female	brain
4	chr2:187584600-187591600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:187584600-187591800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:187584600-187596000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:187587600-187590400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr2:187588000-187590400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:187588400-187591000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:187588800-187591000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:187589200-187590600	Enhancers	Brain Anterior Caudate	brain
12	chr2:187589200-187591800	Weak transcription	Brain Angular Gyrus	brain
13	chr2:187589400-187590600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:187589400-187591800	Weak transcription	Fetal Brain Male	brain
15	chr2:187589600-187590800	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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