Variant report

Variant	rs10165992
Chromosome Location	chr2:187597921-187597922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1072901	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10755000	0.90[EUR][1000 genomes]
rs12471718	0.96[ASN][1000 genomes]
rs12475476	1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs12618322	0.92[CEU][hapmap];0.89[CHB][hapmap];0.88[EUR][1000 genomes]
rs12620821	0.88[CHB][hapmap]
rs13020260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13028008	0.90[EUR][1000 genomes]
rs1448427	0.88[CHB][hapmap]
rs17406346	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs2012128	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2012401	0.90[ASN][1000 genomes]
rs2121975	0.93[CEU][hapmap];0.88[CHB][hapmap]
rs2121976	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2165655	0.81[CHB][hapmap]
rs2276562	0.92[ASN][1000 genomes]
rs2290083	0.90[ASN][1000 genomes]
rs2460766	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2595383	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2595384	0.90[AFR][1000 genomes]
rs2595386	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2595395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2682863	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2682868	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2682873	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3114941	0.90[ASN][1000 genomes]
rs3213964	0.88[CHB][hapmap]
rs34056045	0.94[EUR][1000 genomes]
rs35540241	0.80[ASN][1000 genomes]
rs3768781	0.84[CHB][hapmap]
rs3768785	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs3816375	0.88[CHB][hapmap]
rs3911238	0.84[CHB][hapmap]
rs41265951	0.89[ASN][1000 genomes]
rs4666713	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs4667108	0.88[CHB][hapmap]
rs4667112	0.91[ASN][1000 genomes]
rs4667113	0.92[ASN][1000 genomes]
rs55781198	0.80[ASN][1000 genomes]
rs55961288	0.89[EUR][1000 genomes]
rs62173041	0.95[ASN][1000 genomes]
rs62173045	0.81[ASN][1000 genomes]
rs62196185	0.94[ASN][1000 genomes]
rs6705757	0.88[CEU][hapmap];0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs718259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7585442	0.88[CHB][hapmap]
rs7585471	0.88[CHB][hapmap]
rs930657	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9789704	0.90[EUR][1000 genomes]
rs9967663	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187592200-187618600	Weak transcription	Osteobl	bone
2	chr2:187594600-187598200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:187594600-187598400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:187595200-187602600	Weak transcription	Brain Anterior Caudate	brain
5	chr2:187595600-187599800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:187595800-187600000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
7	chr2:187596000-187598400	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:187596000-187600400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:187596200-187599800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:187596600-187598400	Weak transcription	Pancreas	Pancrea
11	chr2:187596600-187599000	Weak transcription	Fetal Brain Female	brain
12	chr2:187596600-187599800	Weak transcription	Brain Angular Gyrus	brain
13	chr2:187596600-187611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:187596600-187626200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:187596800-187599400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:187596800-187599600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr2:187597000-187599000	Strong transcription	Ovary	ovary
18	chr2:187597400-187598600	Enhancers	Brain Cingulate Gyrus	brain
19	chr2:187597400-187600400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr2:187597600-187598800	Weak transcription	Fetal Brain Male	brain
21	chr2:187597600-187599200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr2:187597600-187599200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr2:187597600-187600000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
24	chr2:187597800-187598200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:187597800-187598200	Enhancers	Brain Substantia Nigra	brain

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