Variant report

Variant	rs2121976
Chromosome Location	chr2:187566790-187566791
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187556991..187559370-chr2:187565562..187567253,3	MCF-7	breast:
2	chr2:187566620..187569156-chr2:187571445..187573222,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144369	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10165992	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1072901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10755000	0.96[EUR][1000 genomes]
rs10931253	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12471718	0.96[ASN][1000 genomes]
rs12475476	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs12618322	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12620821	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs13020260	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs13028008	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1448427	0.88[CHB][hapmap]
rs17406229	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17406346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2012128	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2012401	0.88[ASN][1000 genomes]
rs2121975	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2165655	0.81[CHB][hapmap]
rs2276562	0.98[ASN][1000 genomes]
rs2290083	0.96[ASN][1000 genomes]
rs2460766	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2595383	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2595386	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2595395	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2682863	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2682868	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2682873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3114941	0.87[ASN][1000 genomes]
rs3213964	0.88[CHB][hapmap]
rs34056045	0.87[EUR][1000 genomes]
rs35540241	0.86[ASN][1000 genomes]
rs3768781	0.84[CHB][hapmap]
rs3768785	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs3816375	0.88[CHB][hapmap]
rs3911238	0.84[CHB][hapmap]
rs41265951	0.95[ASN][1000 genomes]
rs4666713	1.00[JPT][hapmap]
rs4667108	0.88[CHB][hapmap]
rs4667112	0.97[ASN][1000 genomes]
rs4667113	0.98[ASN][1000 genomes]
rs55781198	0.86[ASN][1000 genomes]
rs55961288	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62173041	0.97[ASN][1000 genomes]
rs62196185	0.96[ASN][1000 genomes]
rs6705757	0.96[CEU][hapmap];0.88[CHB][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs718259	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7585442	0.88[CHB][hapmap]
rs7585471	0.88[CHB][hapmap]
rs930657	0.92[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes]
rs9789704	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9967663	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187560400-187579400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:187560600-187566800	Weak transcription	Fetal Kidney	kidney
3	chr2:187560600-187575400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:187560600-187582200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:187560600-187584200	Weak transcription	Fetal Lung	lung
6	chr2:187561400-187577800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:187563000-187570200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:187563600-187570000	Weak transcription	Fetal Brain Male	brain
9	chr2:187564200-187570000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:187564800-187567000	Weak transcription	Brain Angular Gyrus	brain
11	chr2:187564800-187569400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:187565000-187567400	Enhancers	Fetal Brain Female	brain
13	chr2:187565000-187570000	Weak transcription	Brain Hippocampus Middle	brain
14	chr2:187565400-187566800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:187566000-187568000	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr2:187566600-187566800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr2:187566600-187567000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:187566600-187567200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr2:187566600-187567400	Enhancers	Brain Anterior Caudate	brain
20	chr2:187566600-187567400	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links