Variant report

Variant	rs2682863
Chromosome Location	chr2:187603969-187603970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187601782..187604448-chr2:187607638..187610400,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10165992	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1072901	0.95[ASN][1000 genomes]
rs10755000	0.88[EUR][1000 genomes]
rs12471718	0.98[ASN][1000 genomes]
rs12475476	0.91[ASN][1000 genomes]
rs12618322	0.86[EUR][1000 genomes]
rs13020260	0.95[ASN][1000 genomes]
rs13028008	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17406346	0.96[ASN][1000 genomes]
rs2012128	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2012401	0.92[ASN][1000 genomes]
rs2121976	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2276562	0.94[ASN][1000 genomes]
rs2290083	0.92[ASN][1000 genomes]
rs2460766	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2595383	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2595384	0.90[AFR][1000 genomes]
rs2595386	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2595395	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682868	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2682873	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3114941	0.91[ASN][1000 genomes]
rs34056045	0.95[EUR][1000 genomes]
rs35540241	0.82[ASN][1000 genomes]
rs3768785	0.82[ASN][1000 genomes]
rs41265951	0.90[ASN][1000 genomes]
rs4667112	0.93[ASN][1000 genomes]
rs4667113	0.94[ASN][1000 genomes]
rs55781198	0.82[ASN][1000 genomes]
rs55961288	0.88[EUR][1000 genomes]
rs62173041	0.96[ASN][1000 genomes]
rs62196185	0.96[ASN][1000 genomes]
rs6705757	0.83[EUR][1000 genomes]
rs718259	0.90[ASN][1000 genomes]
rs930657	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9789704	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9967663	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187592200-187618600	Weak transcription	Osteobl	bone
2	chr2:187596600-187611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:187596600-187626200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:187598600-187621200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:187599600-187631000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:187600000-187613200	Weak transcription	Pancreas	Pancrea
7	chr2:187600200-187611000	Weak transcription	Brain Angular Gyrus	brain
8	chr2:187601800-187604000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:187602600-187604000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr2:187602600-187604200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:187603000-187607400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr2:187603000-187612800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:187603200-187626400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:187603200-187626600	Weak transcription	Fetal Stomach	stomach
15	chr2:187603400-187604200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:187603400-187604600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:187603400-187605200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:187603400-187612600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:187603400-187612800	Weak transcription	Brain Anterior Caudate	brain
20	chr2:187603400-187613000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:187603400-187626400	Weak transcription	Fetal Muscle Leg	muscle
22	chr2:187603600-187626600	Weak transcription	Left Ventricle	heart
23	chr2:187603800-187605600	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr2:187603800-187611800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr2:187603800-187612800	Weak transcription	Brain Hippocampus Middle	brain
26	chr2:187603800-187621200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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