Variant report

Variant	rs9967663
Chromosome Location	chr2:187591171-187591172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:187586395..187588666-chr2:187589274..187592197,2	K562	blood:
2	chr2:187588854..187591621-chr2:187592997..187594763,2	K562	blood:
3	chr2:187584327..187587895-chr2:187590240..187593578,4	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10165992	0.95[ASN][1000 genomes]
rs1072901	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12471718	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12475476	0.91[ASN][1000 genomes]
rs13020260	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17406346	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2012128	0.90[ASN][1000 genomes]
rs2012401	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2121976	0.94[ASN][1000 genomes]
rs2276562	0.94[ASN][1000 genomes]
rs2290083	0.92[ASN][1000 genomes]
rs2595383	0.88[ASN][1000 genomes]
rs2595384	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2595386	0.89[ASN][1000 genomes]
rs2595395	0.97[ASN][1000 genomes]
rs2682863	0.96[ASN][1000 genomes]
rs2682868	0.92[ASN][1000 genomes]
rs2682873	0.96[ASN][1000 genomes]
rs3114941	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35540241	0.82[ASN][1000 genomes]
rs3768785	0.82[ASN][1000 genomes]
rs41265951	0.90[ASN][1000 genomes]
rs4666713	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4667112	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4667113	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55781198	0.82[ASN][1000 genomes]
rs62173041	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62173045	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62196185	0.96[ASN][1000 genomes]
rs718259	0.89[ASN][1000 genomes]
rs930657	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187584600-187591600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:187584600-187591800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:187584600-187596000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:187589200-187591800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:187589400-187591800	Weak transcription	Fetal Brain Male	brain
6	chr2:187590200-187592400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:187590400-187592400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:187590600-187591600	Weak transcription	Brain Anterior Caudate	brain
9	chr2:187590600-187592000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:187590600-187592400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:187590600-187592400	Enhancers	Brain Germinal Matrix	brain
12	chr2:187590600-187594600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:187590800-187591800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:187590800-187592000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr2:187590800-187592200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr2:187590800-187594000	Weak transcription	Fetal Brain Female	brain
17	chr2:187590800-187594400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:187590800-187597800	Weak transcription	Brain Substantia Nigra	brain
19	chr2:187591000-187591400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr2:187591000-187591400	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:187591000-187591400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:187591000-187591600	Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr2:187591000-187592200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr2:187591000-187592200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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