Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187627243..187630051-chr2:187634032..187636877,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10165992	0.90[ASN][1000 genomes]
rs1072901	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12471718	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12475476	0.85[ASN][1000 genomes]
rs13020260	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17406346	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2012128	0.98[ASN][1000 genomes]
rs2012401	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2121976	0.87[ASN][1000 genomes]
rs2276562	0.87[ASN][1000 genomes]
rs2290083	0.85[ASN][1000 genomes]
rs2595383	0.98[ASN][1000 genomes]
rs2595384	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2595386	0.99[ASN][1000 genomes]
rs2595395	0.90[ASN][1000 genomes]
rs2682863	0.91[ASN][1000 genomes]
rs2682868	0.85[ASN][1000 genomes]
rs2682873	0.89[ASN][1000 genomes]
rs34056045	0.83[ASN][1000 genomes]
rs41265951	0.84[ASN][1000 genomes]
rs4666713	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4667112	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4667113	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62173041	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62173045	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62196185	0.89[ASN][1000 genomes]
rs718259	0.97[ASN][1000 genomes]
rs9967663	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3495864	chr2:187633495-187686087	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3495865	chr2:187633495-187686087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187612000-187636200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:187622600-187636200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:187623000-187636200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:187627200-187636800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:187627600-187635200	Weak transcription	Brain Substantia Nigra	brain
6	chr2:187628000-187635200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:187634200-187635000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:187634400-187636000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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