Variant report

Variant	rs62173041
Chromosome Location	chr2:187584051-187584052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187558747..187561002-chr2:187582071..187584698,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227227	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10165992	0.95[ASN][1000 genomes]
rs1072901	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10755000	0.80[ASN][1000 genomes]
rs12471718	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12475476	0.95[ASN][1000 genomes]
rs12618322	0.80[ASN][1000 genomes]
rs13020260	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13028008	0.82[ASN][1000 genomes]
rs17406346	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012128	0.90[ASN][1000 genomes]
rs2012401	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2121976	0.97[ASN][1000 genomes]
rs2276562	0.97[ASN][1000 genomes]
rs2290083	0.96[ASN][1000 genomes]
rs2595383	0.88[ASN][1000 genomes]
rs2595384	0.94[EUR][1000 genomes]
rs2595386	0.89[ASN][1000 genomes]
rs2595395	0.97[ASN][1000 genomes]
rs2682863	0.96[ASN][1000 genomes]
rs2682868	0.96[ASN][1000 genomes]
rs2682873	0.99[ASN][1000 genomes]
rs3114941	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35540241	0.85[ASN][1000 genomes]
rs3768785	0.85[ASN][1000 genomes]
rs41265951	0.94[ASN][1000 genomes]
rs4666713	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4667112	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4667113	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55781198	0.85[ASN][1000 genomes]
rs55961288	0.81[ASN][1000 genomes]
rs62173045	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62196185	0.99[ASN][1000 genomes]
rs6705757	0.81[ASN][1000 genomes]
rs718259	0.89[ASN][1000 genomes]
rs930657	0.81[ASN][1000 genomes]
rs9789704	0.82[ASN][1000 genomes]
rs9967663	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187560600-187584200	Weak transcription	Fetal Lung	lung
2	chr2:187581200-187584400	Enhancers	Brain Hippocampus Middle	brain
3	chr2:187581600-187584400	Enhancers	Brain Cingulate Gyrus	brain
4	chr2:187581600-187584600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:187581600-187584600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:187581800-187584600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:187582000-187584200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:187582000-187584600	Enhancers	Brain Anterior Caudate	brain
9	chr2:187582200-187584200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:187582200-187584400	Enhancers	Brain Germinal Matrix	brain
11	chr2:187582200-187584600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:187582200-187584600	Enhancers	Fetal Brain Male	brain
13	chr2:187582400-187584400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:187583600-187584200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr2:187583600-187584400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr2:187583600-187584600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:187583800-187584200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr2:187583800-187584200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr2:187583800-187584600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:187583800-187588600	Weak transcription	Brain Substantia Nigra	brain
21	chr2:187583800-187588800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:187584000-187584200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr2:187584000-187584400	Enhancers	Brain Angular Gyrus	brain
24	chr2:187584000-187584600	Flanking Active TSS	Fetal Brain Female	brain
25	chr2:187584000-187584600	Enhancers	Pancreatic Islets	Pancreatic Islet

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