Variant report

Variant	rs62173045
Chromosome Location	chr2:187600335-187600336
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10165992	0.81[ASN][1000 genomes]
rs1072901	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12471718	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13020260	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17406346	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2012401	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2595384	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3114941	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4666713	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4667112	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4667113	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62173041	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9967663	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187592200-187618600	Weak transcription	Osteobl	bone
2	chr2:187595200-187602600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:187596000-187600400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:187596600-187611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:187596600-187626200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:187597400-187600400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr2:187598600-187621200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:187599000-187601800	Weak transcription	Ovary	ovary
9	chr2:187599200-187601200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:187599600-187601200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:187599600-187631000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:187599800-187601200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:187600000-187600400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:187600000-187600600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr2:187600000-187601200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr2:187600000-187601800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:187600000-187602200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:187600000-187602600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:187600000-187613200	Weak transcription	Pancreas	Pancrea
20	chr2:187600200-187600600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr2:187600200-187601800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr2:187600200-187602600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr2:187600200-187611000	Weak transcription	Brain Angular Gyrus	brain

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