Variant report

Variant	rs248133
Chromosome Location	chr5:16515276-16515277
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10053236	0.80[EUR][1000 genomes]
rs1020952	0.80[EUR][1000 genomes]
rs12109050	0.80[EUR][1000 genomes]
rs1240951	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1240952	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs162758	0.80[EUR][1000 genomes]
rs162862	0.81[EUR][1000 genomes]
rs2250531	0.96[ASN][1000 genomes]
rs248132	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2596382	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs334470	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs334473	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs334485	0.81[EUR][1000 genomes]
rs334486	0.81[EUR][1000 genomes]
rs334487	0.81[EUR][1000 genomes]
rs334490	0.81[EUR][1000 genomes]
rs334491	0.81[EUR][1000 genomes]
rs425779	0.81[EUR][1000 genomes]
rs595358	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:16509400-16515600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:16509600-16515600	Weak transcription	Brain Substantia Nigra	brain
4	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:16509800-16521000	Weak transcription	Fetal Heart	heart
6	chr5:16511200-16519200	Weak transcription	Fetal Intestine Large	intestine
7	chr5:16511600-16522000	Weak transcription	Primary T cells from cord blood	blood
8	chr5:16511800-16519000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:16512000-16519000	Weak transcription	Fetal Intestine Small	intestine
10	chr5:16513200-16519200	Weak transcription	Left Ventricle	heart
11	chr5:16513200-16519800	Weak transcription	Right Ventricle	heart
12	chr5:16513400-16517000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr5:16514800-16516000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:16515200-16516400	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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