Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr5:16512222-16512413	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:16505398..16507882-chr5:16510089..16512522,2	K562	blood:
2	chr5:16511492..16513352-chr5:16516670..16518535,2	MCF-7	breast:
3	chr5:16506933..16510301-chr5:16511675..16513558,3	K562	blood:

Variant related genes	Relation type
FAM134B	TF binding region
ENSG00000154153	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10053236	0.91[CEU][hapmap]
rs1020952	0.91[CEU][hapmap]
rs12109050	0.91[CEU][hapmap]
rs1240951	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1240952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs162758	0.91[CEU][hapmap]
rs162862	0.80[EUR][1000 genomes]
rs2250531	0.97[ASN][1000 genomes]
rs248132	0.81[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs248133	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2596382	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs334473	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334485	0.91[CEU][hapmap];0.81[GIH][hapmap];0.80[EUR][1000 genomes]
rs334486	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs334487	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs334490	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs334491	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs334492	0.82[CEU][hapmap]
rs425779	0.80[EUR][1000 genomes]
rs4702149	0.87[GIH][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:16509400-16513000	Weak transcription	Right Ventricle	heart
3	chr5:16509400-16515600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:16509600-16515600	Weak transcription	Brain Substantia Nigra	brain
5	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:16509800-16513600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:16509800-16521000	Weak transcription	Fetal Heart	heart
8	chr5:16511000-16512400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr5:16511200-16519200	Weak transcription	Fetal Intestine Large	intestine
10	chr5:16511600-16512600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:16511600-16522000	Weak transcription	Primary T cells from cord blood	blood
12	chr5:16511800-16519000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr5:16512000-16513200	Enhancers	Left Ventricle	heart
14	chr5:16512000-16519000	Weak transcription	Fetal Intestine Small	intestine

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