Variant report

Variant	rs2483576
Chromosome Location	chr10:116343270-116343271
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34118174	1.00[EUR][1000 genomes]
rs34542287	1.00[EUR][1000 genomes]
rs57307018	1.00[EUR][1000 genomes]
rs74158013	1.00[EUR][1000 genomes]
rs74158015	1.00[EUR][1000 genomes]
rs7899950	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116323400-116352000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:116323800-116352000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:116333600-116345000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:116335400-116351600	Weak transcription	Fetal Intestine Small	intestine
5	chr10:116335600-116343400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:116335600-116344200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:116336800-116345400	Weak transcription	Psoas Muscle	Psoas
8	chr10:116336800-116359800	Weak transcription	Lung	lung
9	chr10:116336800-116360000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:116337000-116360200	Weak transcription	Esophagus	oesophagus
11	chr10:116337400-116352800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:116337600-116353000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:116337800-116350000	Weak transcription	Liver	Liver
14	chr10:116337800-116362600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:116338000-116343400	Weak transcription	HSMMtube	muscle
16	chr10:116338000-116343600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:116338000-116343600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:116338000-116345600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:116338200-116345200	Weak transcription	Right Atrium	heart
20	chr10:116340400-116343800	Weak transcription	Left Ventricle	heart
21	chr10:116341400-116356800	Weak transcription	Brain Anterior Caudate	brain
22	chr10:116341800-116343800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:116341800-116345200	Weak transcription	Right Ventricle	heart
24	chr10:116342200-116343400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:116342200-116359800	Weak transcription	Adipose Nuclei	Adipose
26	chr10:116343200-116346400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links